|Tree families database|
TreeFam manages almost all the data in MySQL database. MySQL dump can be downloaded at ftp://ftp.sanger.ac.uk/pub/treefam/release-4.0/MySQL which contains the SQL scripts to create tables and TAB-delimited data files for each table. These tables are relatively independent of each other. The fields of tables are also self-explained, which will facilitate text-based programming.
TreeFam alignment and trees are also available as flat files, which can be downloaded at ftp://ftp.sanger.ac.uk/pub/treefam/release-4.0/flat_file. File aln-4.0.tar.gz contains amino acids and nucleotide multialignment for all the families . Phylogenetic trees are available as trees-4.0.tgz.
http://treesoft.svn.sourceforge.net/viewvc/treesoft/trunk/. Everyone can access Subversion server like this:
svn co https://svn.sourceforge.net/svnroot/treesoft/trunk treesoftIn particular, TreeFam Perl API can be checked out by:
svn co https://svn.sourceforge.net/svnroot/treesoft/trunk/tfscripts/Treefam TreefamDocumentations are available at http://www.treefam.org/api/.
|Last Modified Tue Mar 6 09:39:24 firstname.lastname@example.org|